Basic Information
VIS ID
TVIS44027313
Fusion event
HTLV-1-ITFG1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
47216096/47182185 (Hg38)
End
47216096/47182185 (Hg38)
Orient
+
Location type
Intronic
Target gene
ITFG1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-23b-3p
Nearest miRNA
hsa-mir-1225/Upstream/13018512; hsa-mir-11401/Downstream/3110431;
Nearest TSS
ENST00000527434/Upstream/37741; ENST00000563757/Downstream/14126;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/143926, chr16-CpG: 48/Downstream/278601
Upstream sequence
ttgttcacttgtttatctgctgaccttccctccactattgtcctatgaccctgtcaaatccccctctgcgagaaacatccaagaatgatcaattaaaaaa
Downstream sequence
aaaaaaaacaaaaAAACAGGGAAATTCAGAAGAATTTTAAGTAGGGGAATAAAATGGGCAAATATGTATTAAGGGATGCTCATTCTGGCAGCAATGGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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