Basic Information
VIS ID
TVIS44027316
Fusion event
HTLV-1-ABCC11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
48245579/48211668 (Hg38)
End
48245579/48211668 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCC11
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1225/Upstream/14047995; hsa-mir-11401/Downstream/2080948;
Nearest TSS
ENST00000527434/Upstream/13418; ENST00000570174/Downstream/12039;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/750372, chr16-CpG: 31/Downstream/32753
Upstream sequence
acataatggctcatgtctgtaatcctagcactttgggaggccaagtcgggggattgcttaagcttgggagtttaagaccagcctggggaccatagtgaga
Downstream sequence
cttccatctctttaaaaaaaaaaaaaTCTACTTGTAGCTATTGAAAATAAAAAGCTCTGTCCGTGTCCCACACTGGGGAAAGGTCATTTGGGGTCATACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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