Basic Information
VIS ID
TVIS44027354
Fusion event
HTLV-1-LOC105371317 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
66294266/66260363 (Hg38)
End
66294266/66260363 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371317
Nearest miRNA
hsa-mir-1225/Upstream/8488011; hsa-mir-11401/Downstream/941958;
Nearest TSS
ENST00000527434/Upstream/396579; ENST00000568023/Downstream/106259;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1136602, chr16-CpG: 40/Downstream/10019
Nearby gene
CDH5(+106244) ;
Upstream sequence
cagggtaaatggggtatccatcacctcaagcatttatTCTAAGAGTCTTGAAAAGAACCTGGATCCCAGCTTCATTCTCTCTCTCTTTTCTGtacacaca
Downstream sequence
cacttatatacacacatatatacaccctttcccatgcatatttacacccacacacacagaaacacacccactcacacaggtatgctcatacacatactca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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