Basic Information
VIS ID
TVIS44027361
Fusion event
HTLV-1-LOC400541 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
70196725/70162822 (Hg38)
End
70196725/70162822 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA16B
Target gene
LOC400541
Nearest miRNA
hsa-mir-1225/Upstream/132400; hsa-mir-11401/Downstream/6706114;
Nearest TSS
ENST00000527434/Upstream/17018; ENST00000565806/Downstream/10500;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/47966, chr16-CpG: 69/Downstream/25225
Upstream sequence
GGGTAAAAGCTTCCCGCCTCCTGAAATTCCGACCGGCCTTCTGCCTACAGCTGACCTCAGGAGGAACCTGCCACCTGATGTTCCACACGGGCACGTGTGC
Downstream sequence
ACTCAGGTTTGTGTGGAAAGCAAGGGGGGTCGTGTTCTCACCCTGTGGAAACAACCCTGAGAGAAACAACCAGTGCTCTTTTTCTACACCAGCTTCCATC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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