VISDB Viral Integration Site DataBase

VIS ID

TVIS44027362

Fusion event

HTLV-1-SF3B3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

70562294/70528391 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-503-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-324-3p ; hsa-mir-342-3p ; hsa-mir-320a ; hsa-mir-15b-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-10a-5p ; hsa-mir-100-5p ; hsa-mir-92a-3p ; hsa-mir-30a-3p ; hsa-mir-16-5p ; hsa-mir-1267 ; hsa-mir-1276 ; hsa-mir-3153 ; hsa-mir-3160-3p ; hsa-mir-6733-5p ; hsa-mir-6734-5p ; hsa-mir-6739-5p ; hsa-mir-6783-5p ; hsa-mir-7160-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-411-5p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548n ; hsa-mir-548x-5p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-548aj-5p ; hsa-mir-4524b-3p ; hsa-mir-548aw ; hsa-mir-6867-5p ; hsa-mir-1275 ; hsa-mir-1911-3p ; hsa-mir-4665-5p ; hsa-mir-6753-5p ; hsa-mir-6878-5p ; hsa-mir-6077 ; hsa-mir-4789-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-503-3p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-194-3p ; hsa-mir-6782-5p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-4789-3p ; hsa-mir-4643 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-4261 ; hsa-mir-8069 ; hsa-mir-6815-5p ; hsa-mir-6865-5p ; hsa-mir-943 ; hsa-mir-452-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-345-5p ; hsa-mir-4726-3p ; hsa-mir-3191-5p ; hsa-mir-593-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-8485 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4786-5p ; hsa-mir-4738-5p ; hsa-mir-548q ; hsa-mir-1468-3p ; hsa-mir-4284 ; hsa-mir-5693 ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4632-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-1225/Upstream/497969; hsa-mir-11401/Downstream/6340545;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/4808, chr16-CpG: 57/Downstream/135280

Upstream sequence

gtagctgggattataggcacgtgccaccacacctggctaatttttgtatttttagtagagatgggatcccaccatgttggccaggctggtttcaaactcc

Downstream sequence

tgacctcaagtgatctgcctgcctcagcctcccaaagtgctgggataacaggtgtgagccactgtgcgtggccTTTTTtttttttttttttttttttaga