Basic Information
VIS ID
TVIS44027367
Fusion event
HTLV-1-LOC101928035 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
74236723/74202824 (Hg38)
End
74236723/74202824 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928035
Nearest miRNA
hsa-mir-1225/Upstream/4172402; hsa-mir-11401/Downstream/2666112;
Nearest TSS
ENST00000527434/Upstream/20889; ENST00000561669/Downstream/3341;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1135932, chr16-CpG: 74/Downstream/93811
Upstream sequence
cacgcctgtaatcccagcactttgggaggccaaggtgggtggatcgcttgagtccaggagttcaagaccagcctgggtgacagcaaaaccccatgtctac
Downstream sequence
taaaaatacaaaaattagcgggttgtggtggcacacacctgtagtcccagctacttgggaggctgaagtgggaagactgcttgagcctgggaggcagagg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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