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TVIS44027399
Basic Information
VIS ID
TVIS44027399
Fusion event
HTLV-1-SCO1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
10590352/10687035 (Hg38)
End
10590352/10687035 (Hg38)
Orient
-
Location type
Intronic
Target gene
SCO1
miRNAs that regulate target gene
hsa-mir-193b-3p
;
hsa-mir-6878-3p
;
hsa-mir-6808-5p
;
hsa-mir-455-3p
;
hsa-mir-6807-5p
;
hsa-mir-7847-3p
;
hsa-mir-6880-5p
;
hsa-mir-6799-5p
;
hsa-mir-6851-5p
;
hsa-mir-3689d
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-6134
;
hsa-mir-7113-5p
;
hsa-mir-6754-5p
;
hsa-mir-4441
;
hsa-mir-4270
;
hsa-mir-4756-5p
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-6753-5p
;
hsa-mir-514b-3p
;
hsa-mir-514a-3p
;
hsa-mir-498
;
hsa-mir-3117-5p
;
hsa-mir-4704-5p
;
hsa-mir-655-5p
;
hsa-mir-4693-3p
;
hsa-mir-7162-3p
;
hsa-mir-544b
;
hsa-mir-6765-3p
;
hsa-mir-3622b-3p
;
hsa-mir-3622a-3p
;
hsa-mir-384
;
hsa-mir-8067
;
hsa-mir-6508-5p
;
hsa-mir-873-5p
;
hsa-mir-589-3p
;
hsa-mir-3914
;
hsa-mir-5680
;
hsa-mir-5688
;
hsa-mir-495-3p
;
hsa-mir-7156-5p
;
hsa-mir-4273
;
hsa-mir-2117
;
hsa-mir-203a-3p
;
hsa-mir-6729-3p
;
hsa-mir-1229-3p
;
hsa-mir-8068
;
hsa-mir-5087
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-5003-5p
;
hsa-mir-5089-5p
;
hsa-mir-6728-5p
;
hsa-mir-769-3p
;
hsa-mir-450b-3p
;
hsa-mir-6744-3p
;
hsa-mir-4757-5p
;
hsa-mir-6775-3p
;
hsa-mir-1291
;
hsa-mir-3922-3p
;
hsa-mir-3176
;
hsa-mir-150-5p
;
hsa-mir-186-3p
;
hsa-mir-561-3p
;
hsa-mir-5698
;
hsa-mir-7641
;
hsa-mir-143-5p
;
hsa-mir-4284
;
hsa-mir-6778-3p
;
hsa-mir-6499-3p
;
hsa-mir-4695-3p
;
hsa-mir-4772-3p
;
hsa-mir-4638-5p
;
hsa-mir-1307-3p
;
hsa-mir-1304-3p
;
hsa-mir-6741-3p
;
hsa-mir-1281
;
hsa-mir-4485-5p
;
hsa-mir-5693
;
hsa-mir-6890-3p
;
hsa-mir-6516-5p
;
hsa-mir-548s
;
hsa-mir-3926
;
hsa-mir-3190-5p
;
hsa-mir-942-3p
;
hsa-mir-1273h-5p
;
hsa-mir-149-3p
;
hsa-mir-25-5p
;
hsa-mir-30b-3p
;
hsa-mir-3192-5p
;
hsa-mir-34b-3p
;
hsa-mir-3614-5p
;
hsa-mir-3689a-3p
;
hsa-mir-3689b-3p
;
hsa-mir-3689c
;
hsa-mir-4459
;
hsa-mir-4633-5p
;
hsa-mir-4728-5p
;
hsa-mir-6087
;
hsa-mir-6500-3p
;
hsa-mir-658
;
hsa-mir-6779-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6785-5p
;
hsa-mir-6883-5p
;
hsa-mir-7106-5p
Nearest miRNA
hsa-mir-1253/Upstream/2500031; hsa-mir-10226/Downstream/1394864;
Nearest TSS
ENST00000595228/Upstream/6301;
ENST00000527582/Downstream/10492;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/48558
,
chr17-CpG: 78/Downstream/10073
Upstream sequence
CTGCCACTTTCTTCCTGTGAGTCTCCAAACATTTCTTCACGATTCAAAGGAAAAGGAGAAGAAATTCACAAAGAACAAATGAAAATTCTCCTTTGTAATA
Downstream sequence
TATAAGTCAAATCTTTTTATGACTATCTAGTAAAGACCTGGAGGGAATATTTTCTAATCACTTGTATCACATTTTAAATTGATTTTTAAGGAGTAGTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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