Basic Information
VIS ID
TVIS44027405
Fusion event
HTLV-1-MGC12916 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
14208065/14304748 (Hg38)
End
14208065/14304748 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA17A
Target gene
MGC12916
Nearest miRNA
hsa-mir-1253/Upstream/761102; hsa-mir-10226/Downstream/946879;
Nearest TSS
ENST00000595228/Upstream/894; ENST00000584683/Downstream/22587;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/363, chr17-CpG: 57/Downstream/4298
Upstream sequence
TCCGTGCCAGAGGTGTGCTCCATTGTACCTCCGCTCTGTCCCTGCAGTCAGGCAACCAATTGGAGAAGAGTATAAATAGTAATTAACCAGGGAGAGTTGT
Downstream sequence
AATTCAGAAACCTAGTTAAAACAAGTCCTCAAAAACTAGAGAATATGAGAGTGGGGAGACATTTTGAAGGCATTAAGAACAAAAAACGATGGGGACGAAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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