Basic Information
VIS ID
TVIS44027436
Fusion event
HTLV-1-ASIC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
32359352/34032333 (Hg38)
End
32359352/34032333 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASIC2
Nearest miRNA
hsa-mir-1180/Upstream/1682131; hsa-mir-10226/Downstream/3001412;
Nearest TSS
ENST00000595228/Upstream/47959; ENST00000577709/Downstream/38918;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/738886, chr17-CpG: 46/Downstream/7591
Upstream sequence
aacccagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaagcaaatgctgagagattttgtcaccaccag
Downstream sequence
gcctgccctacaagagctcctgaaggaagcactaaacatggaaaggaacaaccagtaccagctgctgcaaaaacatgccaaattgtaaaaaccatcaagg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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