Basic Information
VIS ID
TVIS44027442
Fusion event
HTLV-1-LOC105371750 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
35108853/36752559 (Hg38)
End
35108853/36752559 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371750
Nearest miRNA
hsa-mir-1180/Upstream/4402357; hsa-mir-10226/Downstream/281186;
Nearest TSS
ENST00000595228/Upstream/29976; ENST00000619297/Downstream/184063;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/48312, chr17-CpG: 65/Downstream/55514
Nearby gene
MRM1(+143446) ;
Upstream sequence
AAAGAAATACTTGCAAATTCGGTGTGAGCTATGACAGAGGTGCACGGACATTCAGCAGGAGGCAGGCAATGGCATCACGGGCTCAGAGTACAGTGAGGGT
Downstream sequence
GAAAGAAGATGATTCCACACATAATAGTTGCTCAGTAAACATCTTTTCCCTTCTCCAGCCTTACTCTTTCCATATAGCCTAACTTTTTAGACTCAGCTGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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