Basic Information
VIS ID
TVIS44027455
Fusion event
HTLV-1-MAPT-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43965484/45888118 (Hg38)
End
43965484/45888118 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MAPT-AS1
Nearest miRNA
hsa-mir-1180/Upstream/412683; hsa-mir-10226/Downstream/1084899;
Nearest TSS
ENST00000595228/Upstream/43283; ENST00000571311/Downstream/6264;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/102556, chr17-CpG: 320/Downstream/5926
Upstream sequence
atctcatgttctggccaccttgatcaagcaccctcagcattcagtcccacatgtccttcccagcttcttgctggtgtatgctggttaggtcttgcagcta
Downstream sequence
ctttggggtataatcccttttctcctttattaggcccatcatgtccctgagttatactgtgacttaaccctagtttacatttcatggccaggaggggagg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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