Basic Information
VIS ID
TVIS44027457
Fusion event
HTLV-1-TTLL6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
46847039/48769677 (Hg38)
End
46847039/48769677 (Hg38)
Orient
+
Location type
Intronic
Target gene
TTLL6
Nearest miRNA
hsa-mir-10226/Upstream/45202; hsa-mir-1250/Downstream/518669;
Nearest TSS
ENST00000595228/Upstream/36586; ENST00000372317/Downstream/24617;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/14407, chr17-CpG: 51/Downstream/47254
Upstream sequence
ACTGtgtctccaccatcagactggggtttccctgaagacaggggctgtCCcccctccaaagactgggagctccccaaagattaggactggttctatcggt
Downstream sequence
ccctctcccctttaagctcctggcacatCCCTGTACACACTGGCACTCACGTGACAGGTTATTCATCCCCAGCTTGGGGTTGTAGTGAGCTGGGAAGAAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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