VISDB Viral Integration Site DataBase

VIS ID

TVIS44027459

Fusion event

HTLV-1-NGFR integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.33

Reference genome

Start

End

47576800/49499438 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-3978 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-4651 ; hsa-mir-608 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-1972 ; hsa-mir-6732-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6507-3p ; hsa-mir-296-5p ; hsa-mir-133a-3p ; hsa-mir-1275 ; hsa-mir-1909-3p ; hsa-mir-2392 ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-3605-5p ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4747-5p ; hsa-mir-5010-5p ; hsa-mir-5196-5p ; hsa-mir-5698 ; hsa-mir-6132 ; hsa-mir-625-5p ; hsa-mir-6511b-5p ; hsa-mir-6516-5p ; hsa-mir-6722-3p ; hsa-mir-6811-5p ; hsa-mir-6825-5p ; hsa-mir-6836-5p ; hsa-mir-6870-5p ; hsa-mir-6894-5p ; hsa-mir-7106-5p ; hsa-mir-7111-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-10226/Upstream/210984; hsa-mir-1250/Downstream/11379;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/1484, chr17-CpG: 55/Downstream/6806

Nearest cancer related gene

NGFR(TSG, No orient, 0)

Upstream sequence

CACAAAGTAGACCCTGGAGGACAGAAAAGAGGGGTCCCAAAGTACAtaaataccttatttacttgtgtaatacttacagcaatcctatgatgcaggtact

Downstream sequence

gtcatcattaccTAATTATGACCCAGGACAAGTGTGGAGCCAGGATTCAGAGTGGCGTGAGAGCTCACAGATTGTATTCAGAGGCTTGCCTCCTCCTGGT