Basic Information
VIS ID
TVIS44027460
Fusion event
HTLV-1-LOC100288866 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
47601493/49524131 (Hg38)
End
47601493/49524131 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100288866
Nearest miRNA
hsa-mir-10226/Upstream/13231; hsa-mir-1250/Downstream/1244519;
Nearest TSS
ENST00000595228/Upstream/26740; ENST00000328741/Downstream/49933;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11078, chr17-CpG: 18/Downstream/32192
Upstream sequence
AGAAACAGGCTGGGCGCCCTGTCTGGGAGCACGGTAATGTCCCCCTTCGCAGGAGGAGAGTCTGCTTGGCAGACTGGCATAGACACTGCCTTAAGCAGAT
Downstream sequence
GCAAACTCAGAGAGGATGCCTGATGCCAGCCAGGCAGCCCTCCATCAGCAAAGACCCTGCATCCAGGGCAAAGATGCAGCCACCGTCCAGTCCAGGAGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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