Basic Information
VIS ID
TVIS44027468
Fusion event
HTLV-1-COX11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
53045018/54967657 (Hg38)
End
53045018/54967657 (Hg38)
Orient
+
Location type
Intronic
Target gene
COX11
Nearest miRNA
hsa-mir-10226/Upstream/4198927; hsa-mir-1250/Downstream/1923613;
Nearest TSS
ENST00000595228/Upstream/3183; ENST00000461444/Downstream/989;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/66711, chr17-CpG: 66/Downstream/585
Upstream sequence
tagagtgctggtcccactccccttcttctccccgccccacccccccaccccgtgtttctgactcagtcctggagtcgggccctagaatttgcacttttaa
Downstream sequence
caggttcccgggtgatgctgatgctgccggtcctgggcgccacactcccagaaccgttgCAATGTACTTAACAGTTTCCAGGTTAAGTACATTACAGTTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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