Basic Information
VIS ID
TVIS44027483
Fusion event
HTLV-1-CEP112 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
63710507/65714389 (Hg38)
End
63710507/65714389 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP112
miRNAs that regulate target gene
hsa-mir-331-3p
Nearest miRNA
hsa-mir-10226/Upstream/892287; hsa-mir-1250/Downstream/1072683;
Nearest TSS
ENST00000595228/Upstream/73356; ENST00000583775/Downstream/28735;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/152576, chr17-CpG: 84/Downstream/477205
Upstream sequence
CATATTTAGTTAATTCTGCTTGTTACATCTAATTTATTCTGGGCTGTGATAACCCAACTGATCAAAATGTGAAAAAGTCAACACTACATATTTTATGGAT
Downstream sequence
CTTATTAGTTTTGGATCCATATGAATATCAAAGTTTTTTTTTAATAATTATTAGCCATTTAAATGAAGATGAACATCTTTAATAGTATATATATCTGTCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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