VISDB Viral Integration Site DataBase

VIS ID

TVIS44027484

Fusion event

HTLV-1-VPS53 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

565710/662470 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-877-3p ; hsa-mir-28-3p ; hsa-mir-328-3p ; hsa-mir-221-3p ; hsa-mir-579-3p ; hsa-mir-664b-3p ; hsa-mir-5696 ; hsa-mir-218-5p ; hsa-mir-3942-3p ; hsa-mir-3978 ; hsa-mir-5100 ; hsa-mir-875-3p ; hsa-mir-138-2-3p ; hsa-mir-1245b-3p ; hsa-mir-205-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-6879-3p ; hsa-mir-122-5p ; hsa-mir-3194-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-1228-3p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6747-3p ; hsa-mir-186-3p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-4302 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-6762-3p ; hsa-mir-3160-5p ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4502 ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4701-3p ; hsa-mir-4728-5p ; hsa-mir-4793-3p ; hsa-mir-490-3p ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6849-3p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-7851-3p

Nearest miRNA

hsa-mir-10226/Downstream/360006;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/159208, chr17-CpG: 80/Downstream/52045

Nearest cancer related gene

VPS53(TSG, No orient, 0)

Upstream sequence

TTGAAAACCAATGAAATGCACTTAGAAAGGAACACTGggccggacacagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatca

Downstream sequence

cgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaactagccaggcacagtggcacgcacctgtagt