Basic Information
VIS ID
TVIS44027496
Fusion event
HTLV-1-ALOX12P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6803508/6900189 (Hg38)
End
6803508/6900189 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
ALOX12P2
Nearest miRNA
hsa-mir-1253/Upstream/244680; hsa-mir-10226/Downstream/117426;
Nearest TSS
ENST00000595228/Upstream/68428; ENST00000480801/Downstream/78771;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/5784, chr17-CpG: 131/Downstream/95312
Upstream sequence
CCGTCCTCCTCACATCCTCTGGTGAACAAATTGTCCCCAAAGCTTTGTGGTCAGGGTATCCAGAGCTGCTCACCACACAACTATGGGGAATACACAGTGA
Downstream sequence
TGGTCCCCATTGCATTTGGAAGTGGCATCCCCCAAAGCTGCCCTACCTTAAATGTCCATCCAGTCCTGCACTTCCTCACCCCGATCCCTGCACACCTCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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