Basic Information
VIS ID
TVIS44027514
Fusion event
HTLV-1-CEP295NL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
76888551/78892469 (Hg38)
End
76888551/78892469 (Hg38)
Orient
-
Location type
UTR5
Target gene
CEP295NL
Nearest miRNA
hsa-mir-10226/Upstream/1495415; hsa-mir-1250/Downstream/814707;
Nearest TSS
ENST00000595228/Upstream/18319; ENST00000591108/Downstream/9359;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/36578, chr17-CpG: 24/Downstream/8527
Upstream sequence
CAGGGAAGGTGCTTGGAGCCAAGAGTGGAGGGTTCAAGGGGCGCCCCCGGGCCTGAGGAGCCACAGAAGCCACAACGTTCCACAGCAAACCTACGAGGAA
Downstream sequence
GGGAGCACAAGTGCAGCTTTCCAGATCGCTCCCAGGAGAGTGAGCAAAGCCCTGGAGACAAGCACACGGGATTCTCACTGTGAGGACAGGCTGCAAAATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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