Basic Information
VIS ID
TVIS44027516
Fusion event
HTLV-1-RBFOX3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
77542572/79546488 (Hg38)
End
77542572/79546488 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBFOX3
Nearest miRNA
hsa-mir-10226/Upstream/2149434; hsa-mir-1250/Downstream/160688;
Nearest TSS
ENST00000595228/Upstream/30340; ENST00000592718/Downstream/160778;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/33592, chr17-CpG: 231/Downstream/62279
Nearby gene
RBFOX3(-30342) ;
Upstream sequence
CTGCTGAAGTGTGGCTCTGAATAAGCACAGAGCCCTATCTGCTCTAAGCCCTTGATTTCCAGCACCCCAAAGAGCAAGACGACTCCCTAAACAGGGTTGA
Downstream sequence
TCGATGGCTTGTCTGTAGCCCCCTCCATGCCCATCCATCTGACGGCTTCCCAATGGCCTGTCTGTAGCCCGCTCCACGCCCATCCATCTGACGGCTTCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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