Basic Information
VIS ID
TVIS44027532
Fusion event
HTLV-1-LOC105372003 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
14416880/14416881 (Hg38)
End
14416880/14416881 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372003
Nearest miRNA
hsa-mir-3976/Upstream/805681; hsa-mir-1-2/Downstream/413285;
Nearest TSS
ENST00000575820/Upstream/284391; ENST00000579292/Downstream/126265;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/22869, chr18-CpG: 78/Downstream/13758
Nearby gene
CXADRP3(-61074) ;
Upstream sequence
TAGCTTTCTTCCGTAATGTTGATTAATTATTACCATGAGTAAATTATATTTAGAGAATATGCTGCAGCAATAAAAAGCTTAATAACAAGGAATCTGGACT
Downstream sequence
AAAGTAGAACAGGGTAAGACCACATCCAATTAAGAAAGCTCTTTGGACACATATATATTCCACCAACAGAGCTACTAAAATGTAACTTACATTCTTAAGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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