Basic Information
VIS ID
TVIS44027535
Fusion event
HTLV-1-LOC102723376 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
15216/15216 (Hg38)
End
15216/15216 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC102723376
Nearest miRNA
hsa-mir-1-2/Downstream/97040;
Nearest TSS
ENST00000575820/Upstream/258; ENST00000580410/Downstream/1682;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2844, chr18-CpG: 58/Downstream/33695
Upstream sequence
CATTATTGATAATTAGATTCTAATTGCTAATAAGTCAGAAAAATTAGGAACACCAAATTTCAGTTGTCTCAAAAGCACTCCTCTTATTAAATTTGGATGT
Downstream sequence
TTACCTTTATCACTTCAAAAGAAATATTGTTAGAAAGGTGTTTAATGTTTTGCAGATGGATAGATTACTGTTATTAGTTCTCATTTCATTGTTAATTTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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