Basic Information
VIS ID
TVIS44027546
Fusion event
HTLV-1-PSMA8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
23763231/26183267 (Hg38)
End
23763231/26183267 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSMA8
Nearest miRNA
hsa-mir-1-2/Upstream/1861521; hsa-mir-122/Downstream/408200;
Nearest TSS
ENST00000575820/Upstream/43181; ENST00000578121/Downstream/42669;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/49278, chr18-CpG: 105/Downstream/43052
Upstream sequence
gattgcttgaggtcaggagtttaagaccagcctgatcaatatggtgaaaccctgtctctactgaaaatacaaaaattagctgggcgtggtggtgggcacc
Downstream sequence
tgtaatcccagctactcaggaggctaaggcaggagaatcgcttgaacctgggaggcagaggttgccgtgagccaagatcgcaccattgcagtccagcctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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