Basic Information
VIS ID
TVIS44027555
Fusion event
HTLV-1-CCDC178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
30880090/33300126 (Hg38)
End
30880090/33300126 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA18A
Target gene
CCDC178
Nearest miRNA
hsa-mir-1-2/Upstream/3001166; hsa-mir-122/Downstream/2291611;
Nearest TSS
ENST00000575820/Upstream/33161; ENST00000647014/Downstream/46096;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/527787, chr18-CpG: 45/Downstream/140420
Upstream sequence
gctgtttcggtcatggggatggatctctcatgaataaattggtgctgtcctcaggatagtgagtgagttctcacaagaaatggttgtttaagtgtggccc
Downstream sequence
ttcctccctctctctttcgctcccactcttgccatgtgacatgcctgcttgcctgctcccacttcactttcctccatgattgttaccttcctgaggccct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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