Basic Information
VIS ID
TVIS44027565
Fusion event
HTLV-1-MIR924HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
36995748/39415784 (Hg38)
End
36995748/39415784 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR924HG
Nearest miRNA
hsa-mir-1-2/Upstream/1758569; hsa-mir-122/Downstream/206339;
Nearest TSS
ENST00000575820/Upstream/75146; ENST00000636983/Downstream/384534;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1848119, chr18-CpG: 34/Downstream/425712
Upstream sequence
gtaattgtgagagcatcataaagtgtacttacgcaaacctacatggtataacctactacacacctaggctacatggtacagcctatttcacctaggctac
Downstream sequence
aaacttatgcagaatattactgtattgaatcctggaagaaactgtgacacaatggtaagtatttgtgtatgcaaatgtatctaaacacagaaaaggtaca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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