Basic Information
VIS ID
TVIS44027566
Fusion event
HTLV-1-DLGAP1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
3947427/3947427 (Hg38)
End
3947427/3947427 (Hg38)
Orient
-
Location type
Intronic
Target gene
DLGAP1
Nearest miRNA
hsa-mir-6718/Upstream/61995; hsa-mir-1-2/Downstream/1893268;
Nearest TSS
ENST00000575820/Upstream/55495; ENST00000582054/Downstream/14926;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/67340, chr18-CpG: 169/Downstream/506542
Upstream sequence
ATGGTGCTGACACTAGGCTGTTCTCAGCCCTTGTCTGGCTTATCTCTTCCAAAATGGTAGATGTCTACCTCTCCCTGTCCCCTCAATCTCTGCCTCTACA
Downstream sequence
TGCTGTTTTGATACAATCCATCTTTCTCTTGTTTCACATAGACACTGGTCTTCATTACTCTGCACTCTGGGCATCAACCACTCACTTAGTCCCAGTTCTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate