Basic Information
VIS ID
TVIS44027569
Fusion event
HTLV-1-LINC00907 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
40200896/42620931 (Hg38)
End
40200896/42620931 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00907
Nearest miRNA
hsa-mir-1-2/Upstream/2944152; hsa-mir-122/Downstream/2349151;
Nearest TSS
ENST00000575820/Upstream/394967; ENST00000591940/Downstream/353164;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2779066, chr18-CpG: 180/Downstream/2058087
Upstream sequence
TCTGTGTTCTTTTTTTTTTTTTTTTTTGTTTCCTTACTACTGTGTTTTAAAGTCTTAACATTGAATCTGATTGCCCAATAAAGCTCTGTGGGCTATCTGA
Downstream sequence
GTTTTACTTCTGTgtttagtggaaaaagtaccaggcttggaatcaggactgcaaagccatgtttgacagttgtgtgatcttgagatattgctcaattttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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