Basic Information
VIS ID
TVIS44027587
Fusion event
HTLV-1-OACYLP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
56712819/59045587 (Hg38)
End
56712819/59045587 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA18B
Target gene
OACYLP
Nearest miRNA
hsa-mir-1-2/Upstream/594429; hsa-mir-5011/Downstream/8035997;
Nearest TSS
ENST00000575820/Upstream/66020; ENST00000591900/Downstream/36337;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/181472, chr18-CpG: 69/Downstream/93789
Upstream sequence
GTGACAGAATGAGACAACCAAAGTTAAGGGAGGAAGggctgggcacagtggctcatgcctgtaatctcaggcgttttggggaggcccttgggaggctgag
Downstream sequence
gggggcatatcacttgaggtgaggagtttgagaccagcctggctaacatggtgaaaccctttctctaccaaaaatacaaatgattagctgagcgtggtgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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