Basic Information
VIS ID
TVIS44027616
Fusion event
HTLV-1-PGK1P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
12671704/12560890 (Hg38)
End
12671704/12560890 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
PGK1P2
Nearest miRNA
hsa-mir-1181/Upstream/1065268; hsa-let-7e/Downstream/142711;
Nearest TSS
ENST00000633603/Upstream/8293; ENST00000498389/Downstream/20085;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5022, chr19-CpG: 34/Downstream/35992
Nearby gene
ZNF564(-9348) ;
Upstream sequence
agaccggtgtttcaccatgttgaccaggctggtctcgaactactgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagc
Downstream sequence
caccgcgcccggccTTCTGTAGGGGTTTTTGAATGGGAAGCTTTTGCCCGGGGAACCAAAGCCCTCATGGATGAGGTGGTGGAGACACTGCCACTTGCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate