Basic Information
VIS ID
TVIS44027621
Fusion event
HTLV-1-ABHD8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
17412395/17301586 (Hg38)
End
17412395/17301586 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA19B
Target gene
ABHD8
Nearest miRNA
hsa-mir-10395/Upstream/1851978; hsa-let-7e/Downstream/980491;
Nearest TSS
ENST00000633603/Upstream/3841; ENST00000594999/Downstream/1281;
Nearest CpG islands
chr19-CpG: 35/Target, None/Upstream, None/Downstream
Upstream sequence
GCACGCGGCCGGGCTTGACCTCTACAAAGGTGTAGCCATCGCTGGACTCGACGCTCTCCAGTGGCCCCACGGCGTTGGGGGGCGTGCCCAGCAGGCAACA
Downstream sequence
GAAGATACCGTCGGTCACCCCGGTCAGCATGGTGTGTCCTGTGAGTGAGGACAGCAGCCAGTTCAGGTGCTGTCTCAATGAGAACCCTGCACCGTGCAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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