Basic Information
VIS ID
TVIS44027643
Fusion event
HTLV-1-LOC107985311 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
31859988/31369082 (Hg38)
End
31859988/31369082 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985311
Nearest miRNA
hsa-mir-10395/Upstream/10969728; hsa-let-7e/Downstream/3753618;
Nearest TSS
ENST00000633603/Upstream/19535; ENST00000591132/Downstream/52915;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/11779, chr19-CpG: 27/Downstream/855396
Nearby gene
TSHZ3(-19798) ;
Upstream sequence
tcattcccagtgttcagtagccacgtgggtgcctgatagccactgtggacagtgcaggtctagggcaAGGAACCCACCAGAGATATTTGCCACTGTTGGC
Downstream sequence
ATCTTCACCTAGCCCTGAAATCCAGCCACCTTTTAATGCCTCCCCGAACCCCCTTACTGGCGTTCTGGACTGAGGGTGGACCGGGTGGCCAGGTGTGACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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