Basic Information
VIS ID
TVIS44027646
Fusion event
HTLV-1-SMIM24 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3478121/3478123 (Hg38)
End
3478121/3478123 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
SMIM24
Nearest miRNA
hsa-mir-1227/Upstream/847330; hsa-let-7e/Downstream/483291;
Nearest TSS
ENST00000633603/Upstream/25482; ENST00000588327/Downstream/365;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/13763, chr19-CpG: 20/Downstream/3661
Upstream sequence
GTCTTCttcaacaggtatttattaagcacctcctgtgttccaggcccaatgctgggtatgaggacacagccaggacaaaagctaagttgcctacacaact
Downstream sequence
ggaaggcaccacgtaatgtctcaaaattagtgaacaactaagacagctccactggtgataagcatgaatcagacttggggctggggacagtgtcaggaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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