VISDB Viral Integration Site DataBase

VIS ID

TVIS44027657

Fusion event

HTLV-1-PLD3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.2

Reference genome

Start

End

40864104/40358197 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-877-5p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-16-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1233-5p ; hsa-mir-185-5p ; hsa-mir-1909-3p ; hsa-mir-1972 ; hsa-mir-2278 ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3150b-3p ; hsa-mir-3175 ; hsa-mir-363-5p ; hsa-mir-3689d ; hsa-mir-3927-3p ; hsa-mir-4293 ; hsa-mir-4306 ; hsa-mir-4447 ; hsa-mir-4451 ; hsa-mir-4458 ; hsa-mir-4472 ; hsa-mir-449b-3p ; hsa-mir-4500 ; hsa-mir-4644 ; hsa-mir-4650-5p ; hsa-mir-4651 ; hsa-mir-4689 ; hsa-mir-4784 ; hsa-mir-505-5p ; hsa-mir-544b ; hsa-mir-588 ; hsa-mir-608 ; hsa-mir-6134 ; hsa-mir-6510-5p ; hsa-mir-6722-3p ; hsa-mir-6731-5p ; hsa-mir-6745 ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6778-5p ; hsa-mir-6786-5p ; hsa-mir-6788-5p ; hsa-mir-6803-5p ; hsa-mir-6831-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6851-5p ; hsa-mir-6858-5p ; hsa-mir-6878-5p ; hsa-mir-6880-5p ; hsa-mir-7110-5p ; hsa-mir-7847-3p ; hsa-mir-8085 ; hsa-mir-92a-2-5p ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-10395/Upstream/75556; hsa-let-7e/Downstream/11649;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/9371, chr19-CpG: 18/Downstream/7513

Upstream sequence

ttgttttgagaccgtgtcttgctctgtcgcccaggctggagtgcagtggcacaatcacggctcactgcagccttgacctcctggactcaagcagtggtcc

Downstream sequence

cacctcagcctcccaagtggctgggaccacaggcgtaggcatgggctaccacacctagccaattatctttttgtttgtttgtttttgagatggagtttcg