Basic Information
VIS ID
TVIS44027686
Fusion event
HTLV-1-ZSCAN1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58567606/58056238 (Hg38)
End
58567606/58056238 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZSCAN1
Nearest miRNA
hsa-let-7e/Upstream/2667996; hsa-mir-10394/Downstream/278450;
Nearest TSS
ENST00000633603/Upstream/22132; ENST00000511556/Downstream/3001;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/10992, chr19-CpG: 116/Downstream/2787
Nearby gene
ZSCAN1(+1607) ;
Upstream sequence
CTGCCTCCAGCCCGTTCCCTCTGCCCCATCCCCATCCTGCAGCCAACAGGGTCCCTCTAAAATGCAGACACTGAAAAGACAAAGCCCAGCAGGGTAGCTC
Downstream sequence
TATAGTGTCCTTTGTGGCCCTGCTGCCTCCACAGCCCCCAGCACTGGGATGGTGGAGGCTGGTGTCCTTAACTCACTGTGTCTCCACCTGACTCCACACT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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