Basic Information
VIS ID
TVIS44027695
Fusion event
HTLV-1-LOC105372262 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
7769460/7704574 (Hg38)
End
7769460/7704574 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
LOC105372262
Nearest miRNA
hsa-mir-1227/Upstream/87069; hsa-let-7e/Downstream/684716;
Nearest TSS
ENST00000633603/Upstream/2428; ENST00000595751/Downstream/27597;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/21746, chr19-CpG: 129/Downstream/25464
Nearby gene
FCER2(-2428) ;
Upstream sequence
AGGGGACATTTCAGCCAGGCCCCTCCCTGACACAGTGGGAACGTCCAGCCCTAGTGGATGGCCCAGCCCAGCCCCCTCCTGGTTGGGAGGTGGGTTGTAG
Downstream sequence
GGGCACAGGGGGGTGTCTTCTGGAGTGAGAGACATGGGAGGTAGCCCACCCAGGAGTGGGGATTTGGAGTTCCCCAGTTGAGAGTGGGGAGGGTGTTAAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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