VISDB Viral Integration Site DataBase

VIS ID

TVIS44027697

Fusion event

HTLV-1-NDUFA7 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8373825/8308941 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-92a-3p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-650 ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-1827 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-219b-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-302f ; hsa-mir-188-3p ; hsa-mir-6870-3p ; hsa-mir-6729-3p ; hsa-mir-4323 ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-1295a ; hsa-mir-5704 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4755-3p ; hsa-mir-6746-5p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-3922-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3714 ; hsa-mir-3168 ; hsa-mir-3937 ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-4799-5p ; hsa-mir-6089

Nearest miRNA

hsa-mir-1227/Upstream/691436; hsa-let-7e/Downstream/80349;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/523, chr19-CpG: 79/Downstream/12257

Nearby gene

CD320(-585) ;

Upstream sequence

gagtaaatgaatAAATGAAACGTCCATTCTCGGAGTCGGGTTGCTTGGGGGGGAAAAAGGAAAGGAAATCaattaattaattaaatttaataataaaggc

Downstream sequence

cgggcgcggtgggtcacgtgtgtgatcccagcattttgggaagcagaggcgggcagatcgcttgagcccaggagttcgagatcagcctgggcaacacagc