Basic Information
VIS ID
TVIS44027733
Fusion event
HTLV-1-C20orf194 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
3233824/3253178 (Hg38)
End
3233824/3253178 (Hg38)
Orient
-
Location type
Intronic
Target gene
C20orf194
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-6815-3p ; hsa-mir-1277-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3667-3p ; hsa-mir-6849-3p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-3614-3p
Nearest miRNA
hsa-mir-1292/Upstream/600336; hsa-mir-1-1/Downstream/664316;
Nearest TSS
ENST00000382410/Upstream/13473; ENST00000446916/Downstream/62912;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/4131, chr20-CpG: 86/Downstream/154140
Upstream sequence
tttgggaggctgaggtagatggatcacttgagcccaggagtttgagaccagcctgggcaacatggcgagacctagtctctaagctgggcgcggtggctca
Downstream sequence
tgtctgtaatcccagcacttcaggaggctgaggtgggaggatcacctgaggtcaggcgtttgagaccagcctgaccaacatggagaaactccgtttctac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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