VISDB Viral Integration Site DataBase

VIS ID

TVIS44027764

Fusion event

HTLV-1-STK4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.12

Reference genome

Start

End

43606836/44978195 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-202-3p ; hsa-mir-3185 ; hsa-mir-4428 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-518f-3p ; hsa-mir-518b ; hsa-mir-518c-3p ; hsa-mir-518a-3p ; hsa-mir-518d-3p ; hsa-mir-4424 ; hsa-mir-4682 ; hsa-mir-887-5p ; hsa-mir-1273f ; hsa-mir-18a-5p ; hsa-mir-4709-3p ; hsa-mir-4724-5p ; hsa-mir-4476 ; hsa-mir-6876-5p ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-3121-5p ; hsa-mir-4714-5p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-605-5p ; hsa-mir-548e-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6499-3p ; hsa-mir-4530 ; hsa-mir-4302 ; hsa-mir-4519 ; hsa-mir-6847-3p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-4435 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6809-5p ; hsa-mir-4755-3p ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-4742-5p ; hsa-mir-4761-5p ; hsa-mir-6865-5p ; hsa-mir-6815-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-566 ; hsa-mir-6789-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4537 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-652-3p ; hsa-mir-508-5p ; hsa-mir-6749-3p ; hsa-mir-3156-3p ; hsa-mir-3157-5p ; hsa-mir-3934-3p ; hsa-mir-532-3p ; hsa-mir-4301 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-101-5p ; hsa-mir-1180-5p ; hsa-mir-1256 ; hsa-mir-1275 ; hsa-mir-1276 ; hsa-mir-3115 ; hsa-mir-3675-5p ; hsa-mir-3910 ; hsa-mir-4525 ; hsa-mir-4665-5p ; hsa-mir-4668-5p ; hsa-mir-4723-5p ; hsa-mir-4753-5p ; hsa-mir-488-3p ; hsa-mir-5010-5p ; hsa-mir-548a-3p ; hsa-mir-548an ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-5681a ; hsa-mir-5698 ; hsa-mir-625-5p ; hsa-mir-6507-5p ; hsa-mir-6730-5p ; hsa-mir-6768-3p ; hsa-mir-6870-5p ; hsa-mir-6890-5p ; hsa-mir-7111-5p ; hsa-mir-7114-3p ; hsa-mir-1224-3p ; hsa-mir-125b-2-3p ; hsa-mir-3165 ; hsa-mir-363-5p ; hsa-mir-3656 ; hsa-mir-3667-5p ; hsa-mir-3974 ; hsa-mir-4433a-3p ; hsa-mir-4457 ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4794 ; hsa-mir-513b-5p ; hsa-mir-6087 ; hsa-mir-624-3p ; hsa-mir-664a-5p ; hsa-mir-6745 ; hsa-mir-6765-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/569992; hsa-mir-1-1/Downstream/447315;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/11592, chr20-CpG: 134/Downstream/119461

Upstream sequence

taaaatagggatagtcatctcatcttcattttttgtaggaatgaattgagatggtgtacagtctctagcagatagcaggcatgcagtgcatggcagctac

Downstream sequence

tatATTACCATCTCATAAGAATACATTCATTACAGTTTTGAATGTGAAGCTTTCAAGATGCCATTTTGTTGTAGTTCTCTTGACAGTTTTTTCCCCAAAA