Basic Information
VIS ID
TVIS44027771
Fusion event
HTLV-1-SULF2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
46339063/47710319 (Hg38)
End
46339063/47710319 (Hg38)
Orient
+
Location type
Intronic
Target gene
SULF2
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-218-5p ; hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-5585-3p ; hsa-mir-4635 ; hsa-mir-4425 ; hsa-mir-3147 ; hsa-mir-339-5p ; hsa-mir-605-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/543261; hsa-mir-1-1/Downstream/2153540;
Nearest TSS
ENST00000382410/Upstream/32418; ENST00000431915/Downstream/26624;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/208006, chr20-CpG: 165/Downstream/74679
Upstream sequence
tagagatggggtgtcactatgttgctcacgctggtctggaactcctgggctcaagtgatcctcccgccttggcctcccaaggtgctgggaatacacgcat
Downstream sequence
gagccaccatgcccaccatatttttactgtactctattaacatgttcacgtatgtttagatacacaaatacttcccattgtgttaccaccgcctacagga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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