VISDB Viral Integration Site DataBase

VIS ID

TVIS44027781

Fusion event

HTLV-1-ATP9A integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.2

Reference genome

Start

End

50358464/51741925 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-8485 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-3913-3p ; hsa-mir-130b-5p ; hsa-mir-3615 ; hsa-mir-6812-3p ; hsa-mir-216b-3p ; hsa-mir-382-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-1283 ; hsa-mir-3614-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-5690 ; hsa-mir-6715b-3p ; hsa-mir-6741-3p ; hsa-mir-6867-3p ; hsa-mir-642a-5p ; hsa-mir-5696 ; hsa-mir-3117-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6758-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6892-3p ; hsa-mir-4639-3p ; hsa-mir-1197 ; hsa-mir-8083 ; hsa-mir-3169 ; hsa-mir-4759 ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-302c-5p ; hsa-mir-6807-5p ; hsa-mir-4713-5p ; hsa-mir-7977 ; hsa-mir-3143 ; hsa-mir-4663 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1226-3p ; hsa-mir-6074 ; hsa-mir-4803

Nearest miRNA

hsa-mir-103a-2/Upstream/288948; hsa-mir-1-1/Downstream/2326483;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/178789, chr20-CpG: 170/Downstream/25211

Upstream sequence

cacaactccaagatgctactctcatctagtggatggaggcagccaaggatgctgcgagacaccttacaatgcacagacaacctccacaacagagaagtat

Downstream sequence

ccagcccaaaacgccacttgtgcccagttgagaactcctgctctaggttttatatataaactatttgtttaaaatggattcactccatttacataaatgt