Basic Information
VIS ID
TVIS44027787
Fusion event
HTLV-1-LOC105372676 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
54169908/55594850 (Hg38)
End
54169908/55594850 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372676
Nearest miRNA
hsa-mir-103a-2/Upstream/1526365; hsa-mir-1-1/Downstream/1726652;
Nearest TSS
ENST00000382410/Upstream/89635; ENST00000243911/Downstream/410622;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/1118396, chr20-CpG: 165/Downstream/408697
Nearby gene
LINC01441(No orient, 126173)
Upstream sequence
aataaaatgatcatatcaataaggccaaaaacacatatatgatagaattgagcattcaatcatATATTTAGTAATATCTATGTCATTTATTATAAAGTAG
Downstream sequence
ATGTAGCTGCTAAAATTTAACATGTGATATATAAATAACATTTCATAAATGAATGAATCACAATAATTTGTTCCTGTAGCTACAGCTTTCAATCTGAATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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