Basic Information
VIS ID
TVIS44027799
Fusion event
HTLV-1-MIR646HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
58879197/60304139 (Hg38)
End
58879197/60304139 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR646HG
Nearest miRNA
hsa-mir-103a-2/Upstream/1485826; hsa-mir-1-1/Downstream/4335;
Nearest TSS
ENST00000382410/Upstream/123251; ENST00000613711/Downstream/457735;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/216234, chr20-CpG: 34/Downstream/663313
Upstream sequence
acatgtctagagtggaagtcccaccccaaactttctctcctaaagtctttcctatcttaaaatgttctaggagatttaagccctgtccttacaggtcctg
Downstream sequence
cagccagaaatacgattcatcctcaactcattcttctctgacacctcacactgaatccatcacaatgccactcagctcaaccttcaatatatgttgagaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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