Basic Information
VIS ID
TVIS44027841
Fusion event
HTLV-1-GRIK1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
31077029/29704710 (Hg38)
End
31077029/29704710 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRIK1
Nearest miRNA
hsa-let-7c/Upstream/2750667; hsa-mir-3197/Downstream/670584;
Nearest TSS
ENST00000624081/Upstream/47304; ENST00000455392/Downstream/43465;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/405245, chr21-CpG: 61/Downstream/234358
Upstream sequence
CTATGCCTCACAAAGTAGTTTGTTCTGCCAAGAGAGAGGCCTTTGAGATACGTAGGAAAGATGGAGGGTGGTTATTGAGGTCTGTAGTGAGACTGCCTGA
Downstream sequence
CTTTTTCCATTACTGCCTTTTTAGCAGTGATTTCTCACTCTCTCCCAACAATCACGGCCCATTGTCCCCAAGCACTTTCAAAGCATACTTTTCATCAGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate