Basic Information
VIS ID
TVIS44027854
Fusion event
HTLV-1-LOC105372804 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
40740469/39368543 (Hg38)
End
40740469/39368543 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372804
Nearest miRNA
hsa-let-7c/Upstream/3647735; hsa-mir-3197/Downstream/78467;
Nearest TSS
ENST00000624081/Upstream/18896; ENST00000442773/Downstream/11701;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/18844, chr21-CpG: 64/Downstream/11618
Nearby gene
WRB(+11744) ;
Upstream sequence
tggccaacatggtgaaaccctgtctctactaaaaatacaaaattatctgggcatggtggcgcgcgcctgtagtcccagctactcgggaagttgaggcagg
Downstream sequence
agaatcgcttgaacccagggggcagaggttgcagtgagccgagatcacgccactgcactacagcctgggcgacagagtgagactccatctcaaaaaaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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