Basic Information
VIS ID
TVIS44027855
Fusion event
HTLV-1-DSCAM integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
41526445/40154518 (Hg38)
End
41526445/40154518 (Hg38)
Orient
+
Location type
Intronic
Target gene
DSCAM
Nearest miRNA
hsa-let-7c/Upstream/707449; hsa-mir-3197/Downstream/57834;
Nearest TSS
ENST00000624081/Upstream/256042; ENST00000427451/Downstream/199136;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/9973, chr21-CpG: 22/Downstream/28173
Upstream sequence
tttttgaactttttttgtagagatgggtttttgccatgttgcccaggctggtctccaactcctgagcttaaataatctgcccaactcagcctcccaaagt
Downstream sequence
gctgggattaccagcagtgaaccactgcttccggtcTCAAATGATATTTTTGTTCATATATCTCTCCTTAGAGTTGCACTGTATTAAATACAGTATCTGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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