Basic Information
VIS ID
TVIS44027863
Fusion event
HTLV-1-UMODL1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43499280/42079171 (Hg38)
End
43499280/42079171 (Hg38)
Orient
-
Location type
Intronic
Target gene
UMODL1
Nearest miRNA
hsa-let-7c/Upstream/332330; hsa-mir-5692b/Downstream/871757;
Nearest TSS
ENST00000624081/Upstream/7854; ENST00000491559/Downstream/6132;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/67791, chr21-CpG: 18/Downstream/27289
Upstream sequence
TACCTGTGAAGGCCACACCTCTTCCTACCTGTTGGCATTGTCAGGACTAGTGAGGGGAGGAGGCCCTGGGGGAGGCTGATCAGCAGCCCCTTCCTGCTCC
Downstream sequence
CGCTCTGCAGGGCCACACCAGCCCCACCCATGCCCACCATCACCTTCTGTAAGAGACCCTGGCCTGCTGCAGCAAACAAGTTAATTCCCTCCCAGAAGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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