Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene4237833742199689422972444223162342239300422762144227910042262331422645784227960942281437422864294228804842264789422660324228415942285200422612784226229242269094422699194224900142249780422679974226849242247801422482004224583142245980422586914225884042289013
Basic Information
VIS ID
TVIS44027864
Fusion event
HTLV-1-ABCG1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43709123/42289013 (Hg38)
End
43709123/42289013 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCG1
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-128-3p
Nearest miRNA
hsa-let-7c/Upstream/542172; hsa-mir-5692b/Downstream/661915;
Nearest TSS
ENST00000624081/Upstream/3079; ENST00000634453/Downstream/24673;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/53658, chr21-CpG: 37/Downstream/16752
Upstream sequence
aaggcaaagtgggatggagcgctacacacttttaaacattcagatctcacaataactcacccattgtcatgagcacagacccaaaggagaagtccacccc
Downstream sequence
catgatccaatcaggccccatctccaacattggggattacaatttgacatgagatttgggcggggacacagacccaaaccatatcaCTAAACTTTCAAAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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