Basic Information
VIS ID
TVIS44027888
Fusion event
HTLV-1-SMPD4P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
20964179/20609892 (Hg38)
End
20964179/20609892 (Hg38)
Orient
-
Location type
Intronic
Target gene
SMPD4P1
Nearest miRNA
hsa-mir-1286/Upstream/360681; hsa-let-7a-3/Downstream/424284;
Nearest TSS
ENST00000624155/Upstream/24946; ENST00000406799/Downstream/103101;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/24826, chr22-CpG: 77/Downstream/57830
Nearby gene
MED15(+22260) ;
Upstream sequence
TTCATCTTGCGCTCAAATTCCCATTCAATCACGTGTGCTCCTTCGCAGGGTGAACGGGACAGACCCCTGGCTGTGGGCACAGCTCGTCTCCCCGGGCTCT
Downstream sequence
CACAGACTCACTAACTCTGTCGTCCCCGAAATCCCCCATGGGCCTGAACTCTGCTTCACTGACCTCAAATCCATCCATACGCTTGTCATTTGTGCCTAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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