Basic Information
VIS ID
TVIS44027900
Fusion event
HTLV-1-LINC01422 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27300218/26904255 (Hg38)
End
27300218/26904255 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01422
Nearest miRNA
hsa-mir-1286/Upstream/348932; hsa-let-7a-3/Downstream/1016270;
Nearest TSS
ENST00000624155/Upstream/915; ENST00000623027/Downstream/115114;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/147085, chr22-CpG: 16/Downstream/534209
Upstream sequence
ctctgctcttggggcattttctgaagtccccataacttcctcaagtggactgctagcccccttttgtgcgaccagggaaccttcacccacctgtattcca
Downstream sequence
gaacttaccacgctgtctagtaactgcactggggagggtctctttccccactgggctgtgaccgctccagaaaggaacttgcctgatgcatctctgcatc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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