Basic Information
VIS ID
TVIS44027906
Fusion event
HTLV-1-NIPSNAP1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
29960703/29564714 (Hg38)
End
29960703/29564714 (Hg38)
Orient
-
Location type
Intronic
Target gene
NIPSNAP1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-145-5p ; hsa-mir-98-5p
Nearest miRNA
hsa-mir-1286/Upstream/1104766; hsa-let-7a-3/Downstream/442335;
Nearest TSS
ENST00000624155/Upstream/9498; ENST00000403999/Downstream/16312;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/10879, chr22-CpG: 31/Downstream/16237
Upstream sequence
tgttagccaggctggtcttgaactcctgacctcaggtgatgcacctgcctcagcctcccaaagtgctgggatacaggcatgagccaccgcgcccagccAA
Downstream sequence
GAAGAAGGAATTGTCTAACAACTGTGGTGCTCTCCATAGGAGATGGATCAATGGTTCTTACAAGTTTATTAAAATGTAGATTCTTGAACCCTACTCCCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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